YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126636854, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSTHTTTPA PAGVKSLSWF DDLLLLGIMA VLAACGLIYE YLLSHYAGRI LGALEAAIYT  60
   61 MIGLMIVSMG VGAFAARKIR CAFTGFAMLE LCVALCGALA ILITAAVIGF GQQLPIIIAS 120
  121 TIGLPPDQLP QGGFIGTLQK LSEYLPYAWG VLLGLMIGME IPLIARVRQS LCDEHLMHNA 180
  181 GTIYGADYIG AGVGAAIWVI FMLALDIQLA AALTASFNLL AGFLFIWRFW SKIRFNRLLL 240
  241 AGHLLATGIL LVLAIHGPKW DQAFNNLLYK DKVVYAKATR FQQLTFTERL RGNHLAPVYS 300
  301 LYINGRLQFS SQDEHIYHAF LVHPTLAASA RHDKVLIIGG GDGLGLRQVL KWQPKQVTLM 360
  361 DLDADLVRLF KEGDPEMPPR LSNALLKLNG DAFNDARVEL LIDDAFNGAD KLIRRGEKFD 420
  421 AIIVDLPDPS HPDLNKLYSD LFYRKLKELL SSDGAISVQS TSPYHAAKAF ISVGKTLQAA 480
  481 SFQVEQYHHN VPSFGEWGWS IGTLRGQNAK QRLSSMTELP VDDPWLTPGL IRAAFEFPKN 540
  541 YYEHADQVKV NDIGSMHLYR YHQRAWSEDE NLTLD

Type	Start	End	Confidence
Cytoplasmic	1	22	0.89
Transmembrane Helix	23	43	0.92
Non-Cytoplasmic	44	55	0.77
Transmembrane Helix	56	76	0.92
Cytoplasmic	77	85	0.84
Transmembrane Helix	86	110	0.86
Non-Cytoplasmic	111	144	0.94
Transmembrane Helix	145	165	0.93
Cytoplasmic	166	180	0.88
Transmembrane Helix	181	202	0.90
Non-Cytoplasmic	203	208	0.75
Transmembrane Helix	209	230	0.92
Cytoplasmic	231	237	0.89
Transmembrane Helix	238	258	0.93
Non-Cytoplasmic	259	575	0.99