YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238723914, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.97
Transmembrane Helix	10	33	0.88
Non-Cytoplasmic	34	41	0.86
Transmembrane Helix	42	64	0.92
Cytoplasmic	65	79	0.82
Transmembrane Helix	80	99	0.94
Non-Cytoplasmic	100	120	0.87
Transmembrane Helix	121	141	0.93
Cytoplasmic	142	150	0.85
Transmembrane Helix	151	172	0.89
Non-Cytoplasmic	173	193	0.83
Transmembrane Helix	194	213	0.93
Cytoplasmic	214	226	0.81
Transmembrane Helix	227	247	0.94
Non-Cytoplasmic	248	280	0.90
Transmembrane Helix	281	302	0.91
Cytoplasmic	303	313	0.75
Transmembrane Helix	314	337	0.84
Non-Cytoplasmic	338	343	0.59
Transmembrane Helix	344	363	0.90
Cytoplasmic	364	369	0.83
Transmembrane Helix	370	392	0.86
Non-Cytoplasmic	393	404	0.89
Transmembrane Helix	405	426	0.87
Cytoplasmic	427	439	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHRLSSKDI MALGFMTFAL FVGAGNIIFP PMVGLQSGEH VWWAALGFLI TAVGLPVITV  60
   61 IALARVGGSI DALSSPIGRS AGLVLATVCY LAVGPLFAIP RTATVSFEVG IAPLTGDGPL 120
  121 PLFIYSVVYF ALVIGISLYP GRLLDTVGHI LAPLKILALA ILGIAALIWP AGPLIPATDA 180
  181 YQQVPFSSGF VNGYLTMDTL GALVFGIVIV NAARSRGVVS PGLLTRYTIW AGLIAGVGLT 240
  241 LVYLSLFKLG SGSGSLTPDA QNGAVVLHAY VQHTFGGLGS VFLAALIFIA CMVTAVGLTC 300
  301 ACAEFFAQYL PLSYRALVFI LGIFSMMVSN LGLSHLIQIS IPVLTAIYPP CIVLVLMSFT 360
  361 LRWWRHASRI VAPVMLVSLL FGILDAVKAS TFAQFLPEWT QHLPLAAQGL AWLSPSLLVF 420
  421 VVVGLYDRLC CRQEVAAKQ