YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77973953
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASSFFPQN SNSQRLLVAF AVTTVFMVVE AIGGWLSGSL ALLADAGHML TDSAALFIAL  60
   61 MAVHFSQRKP DSRHTFGYLR LTTLAAFVNA AALLLIVVLI VWEAVRRFFS PHEVMGIPML 120
  121 IIAIFGLFAN IFCFWILHRG EEEKNINVRA AALHVLGDLL GSVGAIVAAG VILTTGWTPI 180
  181 DPILSVLVSV LVLRSAWRLL KESFHELLEG APQEIDINKL RKDLCTNIYE VRDAHHIHLW 240
  241 QVGDQRLMTL HVQVIPPQDN DELLQRIQHY LLHHYNIGHA TIQMEYQHCR APDCAINQTI 300
  301 STEGHHHHHH

Type	Start	End	Confidence
Cytoplasmic	1	15	0.96
Transmembrane Helix	16	36	0.94
Non-Cytoplasmic	37	45	0.72
Transmembrane Helix	46	65	0.93
Cytoplasmic	66	77	0.88
Transmembrane Helix	78	102	0.86
Non-Cytoplasmic	103	114	0.87
Transmembrane Helix	115	137	0.92
Cytoplasmic	138	149	0.91
Transmembrane Helix	150	173	0.87
Non-Cytoplasmic	174	178	0.70
Transmembrane Helix	179	197	0.84
Cytoplasmic	198	310	0.90