YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77980060, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDKTTTGEK KLTPADIRGV FIRSNLFQGS WNFERMQALG FCFSMVPAIR RLYPENSEER  60
   61 KQAIKRHLEF FNTQPFVAAP ILGVTLAMEE QKANGAEIDD AAINGIKVGL MGPLAGVGDP 120
  121 IFWGTVRPVL AALGAGIAMS GSLLGPLLFF VLFNLVRLLT RYYGVAYGYK KGVNIVSDMD 180
  181 GGLLQKLTEG ASILGLFVMG ALVNKWTHVN IPVVVSKITN QNGQTTVTTV QTILDQLMPG 240
  241 LVPLLLTFGC MWLLRRKVNA LWIIMGFFAI GIFGYWIGFL AP

Type	Start	End	Confidence
Cytoplasmic	1	69	0.72
Transmembrane Helix	70	88	0.47
Non-Cytoplasmic	89	129	0.54
Transmembrane Helix	130	153	0.90
Cytoplasmic	154	186	0.75
Transmembrane Helix	187	206	0.64
Non-Cytoplasmic	207	232	0.70
Transmembrane Helix	233	253	0.72
Cytoplasmic	254	259	0.80
Transmembrane Helix	260	279	0.96
Non-Cytoplasmic	280	282	0.78