YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77979845
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLNKFFFD IYPYMAMVIF FVGSWLRYDY GQYSWRAGSS QMLDKKGVWL ASNLFHIGIL  60
   61 GIFFGHVLGM LTPHWMYESF LPIEIKQKMA MIAGGACGLM MLVGGAMLLH RRLTNARIRA 120
  121 TSTRVDILIL ILLVVQVSLG LLSIPFSAQH MDGSEMMKLV GWAQSIATFR TGASGYLTDV 180
  181 ALIFKLHIVL GLTLFVLFPF SRLVHIWSVP IEYLTRRYQL VRNRH

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.95
Transmembrane Helix	8	28	0.89
Cytoplasmic	29	47	0.92
Transmembrane Helix	48	70	0.91
Non-Cytoplasmic	71	88	0.93
Transmembrane Helix	89	110	0.93
Cytoplasmic	111	126	0.88
Transmembrane Helix	127	147	0.94
Non-Cytoplasmic	148	182	0.87
Transmembrane Helix	183	206	0.85
Cytoplasmic	207	225	0.87