YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238791424, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.95
Transmembrane Helix	16	38	0.94
Cytoplasmic	39	56	0.92
Transmembrane Helix	57	78	0.90
Non-Cytoplasmic	79	101	0.96
Transmembrane Helix	102	127	0.88
Cytoplasmic	128	143	0.83
Transmembrane Helix	144	166	0.88
Non-Cytoplasmic	167	190	0.92
Transmembrane Helix	191	213	0.91
Cytoplasmic	214	229	0.88
Transmembrane Helix	230	253	0.90
Non-Cytoplasmic	254	277	0.91
Transmembrane Helix	278	299	0.86
Cytoplasmic	300	310	0.77
Transmembrane Helix	311	335	0.86
Non-Cytoplasmic	336	345	0.82
Transmembrane Helix	346	366	0.93
Cytoplasmic	367	380	0.84
Transmembrane Helix	381	403	0.91
Non-Cytoplasmic	404	416	0.85
Transmembrane Helix	417	440	0.91
Cytoplasmic	441	455	0.93
Transmembrane Helix	456	476	0.94
Non-Cytoplasmic	477	493	0.86
Transmembrane Helix	494	517	0.89
Cytoplasmic	518	588	0.96
Transmembrane Helix	589	622	0.75
Non-Cytoplasmic	623	663	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGKLTLDAV PLHEPIIMVT VAAIILGGLA LVAALTYFGK WKWLWSEWLT SVDHKKIGIM  60
   61 YILVAMVMLL RGFADAIMMR SQQALASAGE AGFLPPHHYD QIFTAHGVIM IFFMAMPFVV 120
  121 GLMNIVVPLQ IGARDVAFPF LNSLSFWFFV VGVVLINISL GVGEFAGTGW LAYPPLSGKE 180
  181 YNPGVGVDYW IWSLQISGLG TLLTGVNFFA TILKMRAPGM SMMKMPVFTW AALCTNILII 240
  241 VSFPILTVTV ALLTLDRYLG THFFTNDMGG NMMMYINLIW AWGHPEVYIL VLPVFGVFSE 300
  301 VTATFSKKRL FGYTSLVWAT IAITVLSFIV WLHHFFTMGS GANVNAFFGI ATMIISIPTG 360
  361 VKIFNWLFTM YQGRIQFHSA MLWTIGFIIT FSIGGMTGVL LAVPGANFVL HNSLFLIAHF 420
  421 HNVIIGGVVF GCFAGLTYWW PKSFGFTLNE KWGIRAFWFW IIGFFVAFMP LYVLGFMGMT 480
  481 RRLSQDINPE FHAMLMVAAG GAALIACGIL CQVIQVFVSI RDREQNRDLT GDPWGGRTLE 540
  541 WSTSSPPPFY NFAVVPNVVD RDEFWDMKEK GEAYKRPAKY EEIHMPKNTG AGVIIAGFSL 600
  601 IFGFAMIWYI WWLAIIGFVG MIVTWIVKSF DEDVDYYVPV AEVERIENLH HEQISKAGVN 660
  661 HVN