YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77979159
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQDLRLILI VVGAIAIIAL LLHGLWTSRK ERSSLFRDRP VKRPKQERVE TPIESLDEGV  60
   61 GEVRVRTAHP QEKPSFSHID DDDGEMPVIQ HTDTKPAQVK AEPRQKPFAS VPTDYDDPLL 120
  121 GGLSAEQPPH ASPRDPLLGT VDESYSQPRH AESPHVAEPA PRVAPQHVAS QPEPVAPASE 180
  181 VKPQKLKETV LVLHVAAHHG GALGGEVLLQ SVLQSGFQFG EMGIFHRHLS PAGSGPVLFS 240
  241 LANMVKPGSF DPDTMSDFST PGVSMFMMVP SYGDANQNFK LMLQSAQRIA DDVGGVVLDD 300
  301 DRRMMTPQKL ETYKARIREV LDANASA

Type	Start	End	Confidence
Cytoplasmic	1	6	0.81
Transmembrane Helix	7	27	0.94
Non-Cytoplasmic	28	327	0.88