YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238791944, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKWFHQFAK PERLYTLCGR FVPWLGIASV VCLMVGWVWG FGFAPSDYQQ GDSFRIIYLH  60
   61 VPAAIWSMGI YMSMAIAAFV GLVWQMKMSD NVVAAMAPVG AVFTFIALVT GSAWGKPMWG 120
  121 TWWIWDARLT SELVLLFLYL GVIALYNAFD DRKLAGRAAG ILVLVGVVNI PIIHFSVVWW 180
  181 NTLHQGSTNM QQSIDPSMRS PLRWAIIGYL LCFITLTLMR LRNLILQQER HRPWVSALLR 240
  241 KEPRL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	41	0.97
Non-Cytoplasmic	42	62	0.87
Transmembrane Helix	63	84	0.94
Cytoplasmic	85	91	0.90
Transmembrane Helix	92	114	0.91
Non-Cytoplasmic	115	128	0.84
Transmembrane Helix	129	149	0.91
Cytoplasmic	150	157	0.87
Transmembrane Helix	158	180	0.89
Non-Cytoplasmic	181	201	0.94
Transmembrane Helix	202	224	0.87
Cytoplasmic	225	245	0.98