YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238727243, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWIADPTIW AGLATLVVLE IVLGIDNLIF IAILAEKLPR HQRDKARVTG LLCALLMRLV  60
   61 LLASISWLAT LTTPLITLSQ HPFSARDLIM LIGGIFLLFK ATMELNERLE GKDQQQNQQR 120
  121 KGARFWPVVA QIVVLDAIFS LDSVITAVGM VDHLAVMMAA VCIAIGLMLL ASKPLTRFVN 180
  181 AHPTIVILCL SFLLMIGFSL VAEGFGYHIP KGYLYAAIGF SVIIESLNQF SQFNRRRFLS 240
  241 TVRPLRERTA EAVLRMLSGK HEEAELDNHT ANLIADNTSV GQEVFNEQER RMIERVLGLA 300
  301 QRTVSSIMTS RHDVEYLDLN DPPEKLSQLL TKNLHTRIVV TEDSLTDEPL GVIHVIDLLR 360
  361 QQLAGEKLDL RALIRQPLIF PEQVSLLMAL EQFRQAQTHF AFVVDEFGSI EGVVTLTDVM 420
  421 ETIAGNLPVA GEELDARHDI QQTEDGCWIA NGYMPLEDLV LYLPLPLDDK REYHTLAGLI 480
  481 MEYTQRIPQV GEQMKIGDYL FEPLEVSSHR ILKVKITPLK IPDPDYEV

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.94
Transmembrane Helix	9	34	0.86
Cytoplasmic	35	47	0.95
Transmembrane Helix	48	71	0.85
Non-Cytoplasmic	72	82	0.80
Transmembrane Helix	83	103	0.90
Cytoplasmic	104	122	0.96
Transmembrane Helix	123	145	0.87
Non-Cytoplasmic	146	152	0.70
Transmembrane Helix	153	171	0.96
Cytoplasmic	172	180	0.79
Transmembrane Helix	181	202	0.90
Non-Cytoplasmic	203	211	0.74
Transmembrane Helix	212	231	0.88
Cytoplasmic	232	528	0.94