YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77978652, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.80
Transmembrane Helix	10	32	0.83
Cytoplasmic	33	51	0.88
Transmembrane Helix	52	77	0.88
Non-Cytoplasmic	78	90	0.85
Transmembrane Helix	91	114	0.86
Cytoplasmic	115	122	0.74
Transmembrane Helix	123	144	0.87
Non-Cytoplasmic	145	154	0.83
Transmembrane Helix	155	177	0.93
Cytoplasmic	178	206	0.96
Transmembrane Helix	207	227	0.92
Non-Cytoplasmic	228	233	0.87
Transmembrane Helix	234	255	0.93
Cytoplasmic	256	341	0.94
Transmembrane Helix	342	359	0.41
Non-Cytoplasmic	360	379	0.47
Transmembrane Helix	380	401	0.83
Cytoplasmic	402	416	0.53
Transmembrane Helix	417	439	0.63
Non-Cytoplasmic	440	442	0.51
Transmembrane Helix	443	464	0.55
Cytoplasmic	465	471	0.61
Transmembrane Helix	472	495	0.91
Non-Cytoplasmic	496	498	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHLFAGLDF HTGLMLVLAL LFVLFYEAIN GFHDTANAVA TVIYTRAMRS QVAVVMAGVF  60
   61 NFLGVMLGGL SVAYAIVHLL PTDLLLNVSS AHGLAMVFSM LLAAIIWNLG TWYFGIPASS 120
  121 SHTLIGAIIG IGLTNALMTS TSVVDALNVP KMIQIFLSLI LSPIVGLVIA GLMVFLLRRY 180
  181 WNGSKKQQRI HLTPAEREKK DGKRKPPFWT RTALILSAIG VSFSHGANDG QKGIGLIMLV 240
  241 LIGVAPAGFV VNMSATGYDI ARTRDAVTHL QQYYQQHVEV LPHAVALKPL VPAPETLPNT 300
  301 PAQFHCDSSR AMIAIDHAQT LLANLQSYDD LTVDQRSHMR RLLMCVAETA GTVAKLPETS 360
  361 AQDRRFLNNL RTDLLETVEY APTWIIVAVA LALSLGTMIG WKRVAVTIGE KIGKKGMTYA 420
  421 QGVSAQMTAA VSIGIASYTG MPVSTTQVLS SAVAGTMLVD GGGVQSKTVK NIMLAWVLTL 480
  481 PISILLSGGL YWVALKFI