YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238793306, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSVKIGLAW QILIALVLGI LVGAVLHNQI ESREWLVSNV LSPAGDIFIR LIKMIVVPIV  60
   61 ISTLIVGIAG VGDAKKLGRI GLKTIIYFEV ITTVAIIVGI TLANVFQPGH GIDMSALTVV 120
  121 DISQYEKTTE QVQSGSHSLV STILSLIPPN VFASMAKGDM LPIIFFSVLF GLGLSSLPKE 180
  181 TKEPLLNVFK AVSESMFKVT HMIMRYAPIG VFGLISVTVA NFGFASLIPL AKLVILVYAA 240
  241 ILFFALVVLG TVARLCKLRI WTLIRILKDE LILAYSTASS ETVLPRIIEK MEAYGAPKSI 300
  301 TSFVVPTGYS FNLDGSTLYQ SIAAIFIAQL YGIELSIGQE IILVLTLMVT SKGIAGVPGV 360
  361 SFVVLLATLG SVGIPLEGLA FIAGVDRILD MARTALNVVG NALAVLVIAK WEHQFDHKKA 420
  421 KAYEKALFAP EQTPVNQG

Type	Start	End	Confidence
Cytoplasmic	1	6	0.97
Transmembrane Helix	7	27	0.93
Non-Cytoplasmic	28	48	0.90
Transmembrane Helix	49	72	0.89
Cytoplasmic	73	84	0.87
Transmembrane Helix	85	106	0.92
Non-Cytoplasmic	107	157	0.93
Transmembrane Helix	158	177	0.87
Cytoplasmic	178	205	0.90
Transmembrane Helix	206	228	0.88
Non-Cytoplasmic	229	233	0.81
Transmembrane Helix	234	256	0.92
Cytoplasmic	257	353	0.67
Transmembrane Helix	354	383	0.72
Non-Cytoplasmic	384	390	0.54
Transmembrane Helix	391	411	0.58
Cytoplasmic	412	438	0.82