YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238726794, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.63
Transmembrane Helix	9	36	0.78
Cytoplasmic	37	56	0.56
Transmembrane Helix	57	78	0.61
Non-Cytoplasmic	79	79	0.49
Transmembrane Helix	80	104	0.82
Cytoplasmic	105	120	0.91
Transmembrane Helix	121	142	0.92
Non-Cytoplasmic	143	163	0.89
Transmembrane Helix	164	187	0.85
Cytoplasmic	188	201	0.94
Transmembrane Helix	202	223	0.91
Non-Cytoplasmic	224	262	0.96
Transmembrane Helix	263	282	0.94
Cytoplasmic	283	289	0.83
Transmembrane Helix	290	314	0.89
Non-Cytoplasmic	315	333	0.95
Transmembrane Helix	334	358	0.88
Cytoplasmic	359	379	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDYEVLRFI WWLLIGVLLI GFAVTDGFDM GVGILLRIIG KNDTERRIMI NSIAPHWDGN  60
   61 QVWLITAGGA LFAAWPMVYA AAFSGFYIAM ILVLAALFFR PVGFDYRSKL ENNRWRNMWD 120
  121 WGIFAGSFVP AVVFGVAFGN LLQGVPFHMD SYMRLFYTGN FFQLLNPFGL LAGVVSLTML 180
  181 VTQGATYLQM RTRGELHLRS RTAAQISALV MSVAFLLAGI WLVKGIDGFV ITSALDTAAE 240
  241 SNPMRKEVAH QAGAWLINFN KYPSLWALPA LGVILPLFTI LLSRFEKGAW AFLFSSLTIA 300
  301 CVILTAGVTM FPFVMPSSTV PNVSLTMWDA TSSLLTLKVM TIVAIIFVPI ILLYTSWCYY 360
  361 KMFGRIDKDF IENNKHSLY