YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77977611, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSILLILF LIAVSAFFSL SEISLAASRK IKLKLLADDG DINALRVLKL QETPGIFFTV  60
   61 VQIGLNAVAI LGGIVGDAAF SPSFKLVFER FMSPELADQV SFICSFVLVT SLFILFADLT 120
  121 PKRIGMISPE AVAVRIVNPM RFCLMICRPL VWFFNGMANL IFRLFKLPMV RNDDITSDDI 180
  181 YAVVEAGALA GVLRKQEHEL IENVFELESR TVPSSMTSRE SVIYFDLRES EDSIKEKIST 240
  241 HPHSKFLVCD GHIDQVVGYV DSKDLLNRVL GNQSLVLSSG VQIRSALIVP DTLTLSEALE 300
  301 SFKTAGEDFA VILNEYALVV GIITLNDVMT TLMGDLVGQG QEEQIVARDE SSWLIEGGTP 360
  361 IEDVMRVLHI DEFPQSGNYE TIGGFMMYML RKIPKRTDFV KYAGYKFEVV DIDSYKIDQL 420
  421 LVTKLSDLPA PILPKAPHES SDA

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.62
Transmembrane Helix	6	26	0.67
Cytoplasmic	27	54	0.67
Transmembrane Helix	55	76	0.78
Non-Cytoplasmic	77	98	0.71
Transmembrane Helix	99	119	0.88
Cytoplasmic	120	139	0.70
Transmembrane Helix	140	162	0.72
Non-Cytoplasmic	163	443	0.84