YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238793008, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.94
Transmembrane Helix	8	28	0.93
Non-Cytoplasmic	29	39	0.81
Transmembrane Helix	40	58	0.95
Cytoplasmic	59	72	0.87
Transmembrane Helix	73	93	0.94
Non-Cytoplasmic	94	101	0.77
Transmembrane Helix	102	122	0.93
Cytoplasmic	123	130	0.81
Transmembrane Helix	131	150	0.94
Non-Cytoplasmic	151	158	0.76
Transmembrane Helix	159	179	0.92
Cytoplasmic	180	191	0.80
Transmembrane Helix	192	212	0.90
Non-Cytoplasmic	213	217	0.82
Transmembrane Helix	218	239	0.92
Cytoplasmic	240	249	0.86
Transmembrane Helix	250	272	0.91
Non-Cytoplasmic	273	282	0.81
Transmembrane Helix	283	302	0.93
Cytoplasmic	303	324	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTKQQAGLG IFLALTTAVF WGALPIAMKQ VLVVMEPFTI VWYRFMMAAI GLGIILASRR  60
   61 QLPSLKLFRQ RRWLVLLIVA TCGLLGNFIF FSSSLQYLSP TASQVIGQLS PVGMMVASVL 120
  121 ILKERMRITQ VIGAGMLICG LLLFFNTSLY EIFTRLTDYT LGVALGVCAA VVWVSYGVAQ 180
  181 KVLLRRMASQ QILLLLYTLC AIALFPMAKP AVIFQLNGWQ FACLLFCGVN TLVGYGALAE 240
  241 AMARWQAAQV SALVTLTPLF TLFFSILLAL AWPEMFAAPS LNLVGYAGAF VVVAGAMFSA 300
  301 IGHRWWPRRT EINLVAPQKQ QPGE