YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77977553
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.49
Transmembrane Helix	34	56	0.90
Cytoplasmic	57	71	0.46
Transmembrane Helix	72	91	0.92
Non-Cytoplasmic	92	98	0.42
Transmembrane Helix	99	121	0.90
Cytoplasmic	122	161	0.55
Transmembrane Helix	162	196	0.71
Non-Cytoplasmic	197	204	0.42
Transmembrane Helix	205	225	0.89
Cytoplasmic	226	235	0.50
Transmembrane Helix	236	256	0.48
Non-Cytoplasmic	257	292	0.93
Transmembrane Helix	293	315	0.89
Cytoplasmic	316	325	0.95
Transmembrane Helix	326	350	0.84
Non-Cytoplasmic	351	361	0.78
Transmembrane Helix	362	383	0.93
Cytoplasmic	384	400	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMPGLGLFN TVKHFVMGSR ESDTTSMVLY DRTLLWLTFG LAIIGFVMVT SASMPIGQRL  60
   61 ASDPFLFAKR DALYLALAFG LSLVTLRIPM AVWQRYSNIM LLISIVMLLV VLVVGSSVNG 120
  121 ASRWISLGPL RIQPAELSKL SLFCYLASYL VRKVEEVRSN FWGFCKPMGV MVILAVLLLA 180
  181 QPDLGTVVVL FITTLAMLFL AGAKMWQFLA IIGSGVFAVC LLIVAEPYRM RRVTSFWNPW 240
  241 ADPFGSGYQL TQSLMAFGRG EFWGQGLGNS VQKLEYLPEA HTDFIFSILG EELGYFGVVL 300
  301 ALLMVFFVAF RAMSIGRRAL EIDQRFSGFL ACSIGVWFSF QALVNVGAAA GMLPTKGLTL 360
  361 PLISYGGSSL IIMSTAIVLL LRIDFETRLA KAQAFVRSAR