YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238794712, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELISLYGLF LAKVVTIVVA IGAVVLLVVS QGMRKQGQRG ELNLVDLGEQ YKEMQREMRL  60
   61 ARMSHAEQKT WIKEFKKQQK SDQKLKKQRA KAGAVAAVKP CLYVIDFKGS IDAHEVTSLR 120
  121 EEISAVLAVA SAQDEVLLRL ESPGGVVHGY GLAASQLERL RHKGIRLTVA VDKVAASGGY 180
  181 MMACVADRII SAPFAIIGSI GVVAQIPNFH RLLKKNDIDV ELHTAGEFKR TLTLFGENTE 240
  241 QGREKFREDL NETHLLFKQF VQQQRPSLDI DAVATGEHWF GTQAKDKGLV DAIGTSDDLL 300
  301 IAEMDNHEVI GVHYARRKRL MDRFTGSAAE SADRLLLRWW QRGEKPLL

Type	Start	End	Confidence
Cytoplasmic	1	8	0.43
Transmembrane Helix	9	30	0.90
Non-Cytoplasmic	31	348	0.61