YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77977377
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINSLTTRIF AIFWFTLALV LMLVLMVPKL DSRQMTALLD SEQRQGTMLE QHIEAELASD  60
   61 PANDLMWWRR LYRAIEKWAP PGQHLVLVTT EGRVIGAQRH EMQIVRNFIG QSDNSDQPKK 120
  121 KKYGRVEMVG PFSIRDGEDN YQLYLIRPAS SPQSDFINLM FDRPLLLLIV TMLISAPLLL 180
  181 WLAWSLAKPA RKLKNAADDV ARGNLKQHPE LESGPQEFLA TGASFNQMIS ALDRMVVAQQ 240
  241 RLISDISHEL RTPLTRLQLA TALMRRRHGE GKELERIEME AQRLDSMIND LLVLSRSQHK 300
  301 NELHREPIKA NDLWSDVLEN AQFEADQMGK TLEITAPPGP WTLFGNPAAL DSALENIVRN 360
  361 ALRYSHHHIA VAFSSDNQGI TITVDDDGPG VSPEDREQIF RPFYRTDEAR DRESGGTGLG 420
  421 LAIVETAVNQ HRGWVRAEDS PLGGLRLILW LPLHPLKS

Type	Start	End	Confidence
Cytoplasmic	1	8	0.47
Transmembrane Helix	9	28	0.81
Non-Cytoplasmic	29	163	0.63
Transmembrane Helix	164	184	0.92
Cytoplasmic	185	458	0.61