YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238791911, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFIRFVIDF ILHIDVHLAE LVAQYGIWVY AILFLILFCE TGLVVTPLLP GDSLLFVAGA  60
   61 LASLPSNDIN VHVMVALMVT AAILGDAVNY TIGRVFGEKL FSNPDSKIFR RSYLEKTHQF 120
  121 YEKHGGKAIV LARFVPIIRT FAPFVAGMGK MSYRHFAAYN VIGALVWVLL FTYAGYLFGN 180
  181 VPIVQNNLKL LIVAIIVVSI LPGVFEVWRH RRAQSRQKNQ

Type	Start	End	Confidence
Cytoplasmic	1	25	0.78
Transmembrane Helix	26	49	0.84
Non-Cytoplasmic	50	70	0.74
Transmembrane Helix	71	92	0.87
Cytoplasmic	93	155	0.89
Transmembrane Helix	156	177	0.93
Non-Cytoplasmic	178	187	0.84
Transmembrane Helix	188	208	0.93
Cytoplasmic	209	220	0.93