YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77976912, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVILGYIVV LGAVFGGYMI VGGNLGALYQ PAEFLIIGGA GVGAFIVGNN GKAIKATIKA  60
   61 MPKLMRRSKY NKVLYMDLMA LLYRLLAKSR QQGMLSLERD IESPRESEIF SNYPRILADK 120
  121 LLVEFITDYL RLIVSGNMNA FEIEALMDEE IETHEQECEV PAGSLAMVGD SLPAFGIVAA 180
  181 VMGVVHALAS ADRPAAELGA LIAHAMVGTF LGILLAYGFI SPLATLLRQQ SAETTKMMQC 240
  241 IKVTLLSSLN GYAPQIAVEF GRKTLYTTER PSFIELEEHV RRVKAPAPQA TEEDA

Type	Start	End	Confidence
Cytoplasmic	1	6	0.76
Transmembrane Helix	7	27	0.91
Non-Cytoplasmic	28	33	0.72
Transmembrane Helix	34	53	0.92
Cytoplasmic	54	170	0.57
Transmembrane Helix	171	190	0.91
Non-Cytoplasmic	191	199	0.43
Transmembrane Helix	200	221	0.92
Cytoplasmic	222	295	0.46