YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77976848
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLFSSLAF SSSAFLSSAT TPVPVLIAGI TIIATRILGV LLLVATLGWR GVGEFISESL  60
   61 QSWDFGSIFF ASVVLLLLEI VCGVAVCYRK NWARWCYLVC QIITIIYLLM VSLDWLYLDV 120
  121 FRVEGDTGSE ILHSLLLQKI PDVVIIGLLF FPWHRYFAQS K

Type	Start	End	Confidence
Cytoplasmic	1	20	0.78
Transmembrane Helix	21	45	0.82
Non-Cytoplasmic	46	64	0.90
Transmembrane Helix	65	88	0.90
Cytoplasmic	89	94	0.91
Transmembrane Helix	95	118	0.88
Non-Cytoplasmic	119	134	0.94
Transmembrane Helix	135	157	0.83
Cytoplasmic	158	161	0.91