YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238793902, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSSFFPQD SNSKRLLIAF VVTSLFMVVE AIGGWLSGSL ALLADAGHML TDSAALFIAL  60
   61 MAVHFSRRKP DARHTFGYLR LTTLAAFVNA AALLLIVVLI VWEAVRRFFS PHEVMGVPML 120
  121 IIAIAGLFAN IFCFWILHRG EEEKNINVRA AALHVLGDLL GSVGAIVAAV VILTTGWTPI 180
  181 DPILSVLVSA LVLRSAWRLL KESFHELLEG APQEIDIDKL RKDLCASIYE VRDVHHIHLW 240
  241 QVGEQRLMTL HVQVIPPMDN DELLHRIEHH LLHHYNIGHA TIQMEYQQCK APDCGINHTA 300
  301 SSGGHHHHH

Type	Start	End	Confidence
Cytoplasmic	1	15	0.97
Transmembrane Helix	16	36	0.94
Non-Cytoplasmic	37	45	0.71
Transmembrane Helix	46	65	0.93
Cytoplasmic	66	77	0.89
Transmembrane Helix	78	102	0.86
Non-Cytoplasmic	103	115	0.85
Transmembrane Helix	116	137	0.93
Cytoplasmic	138	150	0.89
Transmembrane Helix	151	173	0.89
Non-Cytoplasmic	174	179	0.65
Transmembrane Helix	180	197	0.83
Cytoplasmic	198	309	0.87