YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|123444255, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQFILRRLG LVIPTFIGIT LLTFAFVHMI PGDPVTIMAG ERGISTERHA QIMAEMGLDK  60
   61 PLYQQYFHYV NGVLHGDLGI SLKSRIAVWE EFVPRFKATL ELGICAMLFA IAVGIPVGVL 120
  121 AAVKRGSIFD HTAVGISLTG YSMPIFWWGI MLIMLVSVQW NLTPVSGRVS DTVFLDDSLP 180
  181 LTGFMLIDTF VWGEPGDFKD AVMHMILPAI VLGTIPLAVI VRMTRSSMLE VLGEDYIRTA 240
  241 RAKGLSRMRV IVVHALRNAL LPVVTVIGLQ VGTMLAGAIL TETIFSWPGL GRWLMDALQR 300
  301 RDYPVVQGGV LLVAIMIILV NLLVDVLYGV VNPRIRHKK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	30	0.93
Non-Cytoplasmic	31	98	0.80
Transmembrane Helix	99	123	0.87
Cytoplasmic	124	132	0.55
Transmembrane Helix	133	158	0.73
Non-Cytoplasmic	159	200	0.68
Transmembrane Helix	201	221	0.94
Cytoplasmic	222	257	0.92
Transmembrane Helix	258	281	0.87
Non-Cytoplasmic	282	307	0.84
Transmembrane Helix	308	331	0.88
Cytoplasmic	332	339	0.92