YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238725433, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.97
Transmembrane Helix	10	33	0.88
Non-Cytoplasmic	34	41	0.86
Transmembrane Helix	42	64	0.92
Cytoplasmic	65	76	0.84
Transmembrane Helix	77	99	0.87
Non-Cytoplasmic	100	120	0.89
Transmembrane Helix	121	141	0.93
Cytoplasmic	142	150	0.85
Transmembrane Helix	151	172	0.88
Non-Cytoplasmic	173	193	0.83
Transmembrane Helix	194	213	0.93
Cytoplasmic	214	226	0.81
Transmembrane Helix	227	247	0.94
Non-Cytoplasmic	248	280	0.90
Transmembrane Helix	281	302	0.92
Cytoplasmic	303	313	0.75
Transmembrane Helix	314	337	0.84
Non-Cytoplasmic	338	343	0.63
Transmembrane Helix	344	364	0.89
Cytoplasmic	365	369	0.86
Transmembrane Helix	370	392	0.86
Non-Cytoplasmic	393	408	0.86
Transmembrane Helix	409	430	0.89
Cytoplasmic	431	439	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHRLSSKDI MALGFMTFAL FVGAGNIIFP PMVGLQSGEH VWWAALGFLI TAVGLPVITV  60
   61 IALARVGGGI DALSTPIGRS AGLVLATVCY LAVGPLFATP RTATVSFEVG IAPLTGDGPL 120
  121 PLFIYSVVYF ALVIGISLYP GRLLDTVGHI LAPLKILALA ILGIAALIWP AGPLIPATDA 180
  181 YQNVPFSSGF VNGYLTMDTL GALVFGIVIV NAARSRGVVS AGLLTRYTIW AGLIAGVGLT 240
  241 LVYLSLFKLG SGSGSLTPDA QNGAVVLHAY VQHTFGGLGS LFLAALIFIA CMVTAVGLTC 300
  301 ACAEFFAQYL PLSYRALVFI LGIFSMMVSN LGLSHLIQIS IPVLTAIYPP CIVLVLMSFT 360
  361 LRWWHHASRI VAPVMLVSLL FGILDAVKAS TFAHFLPEWT QHLPLAEQGL AWLSPSLLVF 420
  421 VVVGLYDRLC CRQAVAAKQ