YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77976247
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTQNKSVK QTKNRPNTAK LPTLGRVLGR IHITVALVSV ATAGIFLTLA ALFALRVYAD  60
   61 HNLHLVARSI SYTTEAAVVF GDSVVANEAL SLIAKNEEVA QAKILDVDGR EVANWTLPND 120
  121 GPMFDMEQKI ARWALPEPVV LPIEHSGKKV GSIVIFGHGG NLLRFLLQGL AGLFICLILS 180
  181 TIVALFLSRR MLFGIIESLN KITEVAHNVS RHRSFGQRVP SAKIAELNEL SNDFNGLLEE 240
  241 LEVWQDHLTQ ENDFLAHRAA HDSLTGLANR AFFEGRLSRT LSDCAADEQL AVLFIDGDHF 300
  301 KEINDNYGHA AGDLVLTAIA DRIRSLLRET DLVARLGGDE FAVLLAPIHN TDDVLTIANK 360
  361 IIDSMNQPID LVDGSEITTS ISIGIAIYPD HAQTPEDLLQ RADEAMYQAK KSFPSGGVIT 420
  421 HQSDITLTES LG

Type	Start	End	Confidence
Cytoplasmic	1	32	0.80
Transmembrane Helix	33	55	0.90
Non-Cytoplasmic	56	164	0.81
Transmembrane Helix	165	187	0.92
Cytoplasmic	188	432	0.81