YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238725034, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.92
Transmembrane Helix	13	34	0.88
Non-Cytoplasmic	35	58	0.90
Transmembrane Helix	59	77	0.93
Cytoplasmic	78	93	0.88
Transmembrane Helix	94	115	0.93
Non-Cytoplasmic	116	124	0.86
Transmembrane Helix	125	145	0.91
Cytoplasmic	146	153	0.80
Transmembrane Helix	154	175	0.90
Non-Cytoplasmic	176	180	0.71
Transmembrane Helix	181	199	0.73
Cytoplasmic	200	205	0.52
Transmembrane Helix	206	220	0.73
Non-Cytoplasmic	221	222	0.30
Transmembrane Helix	223	241	0.68
Cytoplasmic	242	257	0.60
Transmembrane Helix	258	279	0.74
Non-Cytoplasmic	280	287	0.68
Transmembrane Helix	288	312	0.81
Cytoplasmic	313	327	0.75
Transmembrane Helix	328	350	0.92
Non-Cytoplasmic	351	359	0.76
Transmembrane Helix	360	380	0.89
Cytoplasmic	381	392	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNIIRQFLR QEAAGGLILI FAALVALFMA NSPLQGLYQS FLDVPVSVKI ASLDISKPLL  60
   61 LWINDGLMAV FFLVVGLEVK RELMEGSLAG RDKAVFPAIA ALGGMLAPAL IYLLFNGADD 120
  121 VTRQGWAIPA ATDIAFALGV MALLGNRVPT SLKVFLLALA IIDDLGVIII IALFYTHEVS 180
  181 VQALAIAAAA IALLGYMNWR GVGKTSAYLL VGLVLWVCIL KSGVHATLAG VIVGFMIPLH 240
  241 TKDKRSPSES LEHGLHPWVA YLILPLFAFA NAGVSLQGVS LSGLTSLLPL GIASGLFIGK 300
  301 PLGIFLFSWL AVKLGIAKMP EAINFKQIFA VSVLCGIGFT MSIFIASLAF EGGDIALTTY 360
  361 SKLGILLGST SAAVVGYCLL RSALPANKKV TH