YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77976101
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.65
Transmembrane Helix	34	56	0.90
Non-Cytoplasmic	57	71	0.57
Transmembrane Helix	72	90	0.89
Cytoplasmic	91	98	0.54
Transmembrane Helix	99	121	0.89
Non-Cytoplasmic	122	134	0.52
Transmembrane Helix	135	151	0.36
Cytoplasmic	152	161	0.64
Transmembrane Helix	162	182	0.71
Non-Cytoplasmic	183	183	0.39
Transmembrane Helix	184	201	0.63
Cytoplasmic	202	204	0.36
Transmembrane Helix	205	230	0.80
Non-Cytoplasmic	231	292	0.75
Transmembrane Helix	293	315	0.89
Cytoplasmic	316	325	0.95
Transmembrane Helix	326	350	0.84
Non-Cytoplasmic	351	361	0.78
Transmembrane Helix	362	383	0.93
Cytoplasmic	384	400	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMPGLGLFN TLKHFVMGSR ESDTTSMVLY DRTLLWLTFG LAIIGFVMVT SASMPIGQRL  60
   61 ASDPFLFAKR DALYLTLAFG LSLVTLRIPM EIWQRYSNIM LLISIVMLLV VLVVGSSVNG 120
  121 ASRWIALGPL RIQPAELSKL SLFCYLASYL VRKVEEVRSN FWGFCKPMGV MVILAVLLLA 180
  181 QPDLGTVVVL FVTTLAMLFL AGAKMWQFLA IIGSGVFAVC LLIVAEPYRM RRVTSFWNPW 240
  241 ADPFGSGYQL TQSLMAFGRG ELWGQGLGNS VQKLEYLPEA HTDFIFSILG EELGYFGVVL 300
  301 ALLMVFFVAF RAMSIGRRAL EIDQRFSGFL ACSIGIWFSF QALVNVGAAA GMLPTKGLTL 360
  361 PLISYGGSSL IIMSTAIVLL LRIDFETRLA KAQAFVRSAR