YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77976100
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKTKRLMV MAGGTGGHVF PGLAVAHHLI AQGWQVRWLG TADRMEASLV PKHGIEIDFI  60
   61 QISGLRGKGL MAQLTAPVRI YRAVCQAKKI MRDYQPDVVL GMGGYVSGPG GLAAWLCGIP 120
  121 VVLHEQNGIA GLTNRWLAKI AKKVLQAFPG AFPHAEVVGN PVRTDVLALP LPAERLSGRE 180
  181 GPIRVLVIGG SQGARVLNQT LPQVAATLGE QITVWHQVGK GALPDVLEAY QQAGQGGKHQ 240
  241 IVEFIDDMAA AYAWADVVVC RSGALTVSEV AAAGLPAIFV PFQHKDRQQY WNALPLEKAG 300
  301 AAKIIEQPQF TAQAVSNLLA QWDRDTLLAM AEQARQVAIP DATERVAAEV VAASK

Type	Start	End	Confidence
Cytoplasmic	1	7	0.76
Transmembrane Helix	8	30	0.73
Non-Cytoplasmic	31	355	0.64