YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77975550
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFSLALGL ILSWGAFAAI DTYTFSSVTQ EQQYRELTEQ LRCPKCQNNS IADSNAIIAA  60
   61 DMRGKVYELQ QQGKSKQQII DYMVVRYGNF VTYEPPVTPA TLILWVGPAL FVLIGAVAVV 120
  121 LRARRRVEKE APLSTQEQQR LQNLLASEEK PPGINKNRLT GNNHNGFLAS SDYFTGGCRC 180
  181 LVGHSGDATK DRPPSDDS

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	100	0.99
Transmembrane Helix	101	121	0.88
Cytoplasmic	122	198	0.92