YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77975378
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.91
Transmembrane Helix	6	25	0.94
Cytoplasmic	26	32	0.88
Transmembrane Helix	33	51	0.94
Non-Cytoplasmic	52	56	0.86
Transmembrane Helix	57	75	0.96
Cytoplasmic	76	86	0.86
Transmembrane Helix	87	107	0.94
Non-Cytoplasmic	108	125	0.85
Transmembrane Helix	126	145	0.94
Cytoplasmic	146	161	0.89
Transmembrane Helix	162	180	0.92
Non-Cytoplasmic	181	186	0.74
Transmembrane Helix	187	208	0.91
Cytoplasmic	209	216	0.77
Transmembrane Helix	217	235	0.91
Non-Cytoplasmic	236	240	0.75
Transmembrane Helix	241	261	0.91
Cytoplasmic	262	463	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGLVTAAY IVAAILFIFS LAGLSRHETS KQGNSFGVAG MAIALIATIL GPDSGNVAWI  60
   61 IIAMVIGGAI GIYLAKKVEM TEMPELVAIL HSFVGLAAVL VGFNSYLDHG SAVMDAVMVN 120
  121 IHLTEVFLGI FIGAVTFTGS IVAFGKLRGI ISSKPLMLPQ RHKLNLVALV VSFLLMILFV 180
  181 KTDSVALQVV ALLLMTLIAL GFGWHLVASI GGADMPVVVS MLNSYSGWAA AAAGFMLSND 240
  241 LLIVTGALVG SSGAILSYIM CKAMNRSFLS VIAGGFGTDG SSTGDAEEMG EYRETTAEEV 300
  301 ADLLKNASSV IITPGYGMAV AQAQYPVAEI TAKLQARGIK VRFGIHPVAG RLPGHMNVLL 360
  361 AEAKVPYDVV LEMDEINDDF PSTDVVLVIG ANDTVNPAAL EDPRSPIAGM PVLEVWKAQS 420
  421 VIAFKRSMNT GYAGVQNPLF FKDNTQMLFG DAKDSVEAIL RAL