YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77975341
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPLKPRID FEQPLQPLDE PVLKAAQEFS QQAGENFYPA TPELDAENEE GRVEGLVNAA  60
   61 LKPKRSLWRK MVTVGVALFG VSVIAQSVQW VNQAWQQQDW IALGATTAGG LIVLAGVGSV 120
  121 VTEWRRLYRL RQRAEERDIA RELLVSHGIG QGRVFCEKLA RQAGLDQGHP ALQRWQASLH 180
  181 ETHNDREVVE LYAKLVQPAL DNQARAEISR YAAESALMIA VSPLALVDMA FIAWRNIRLI 240
  241 NRIAALYGIE LGYFSRIRLF RLVLLNIAFA GASELVREVG MDWLSQDLAA RLSARAAQGI 300
  301 GAGLLTARLG IKAMELCRPL PWLGEDKPKL GDFRRQLISQ LKNTLPKKDK ANQS

Type	Start	End	Confidence
Cytoplasmic	1	70	0.97
Transmembrane Helix	71	90	0.92
Non-Cytoplasmic	91	99	0.90
Transmembrane Helix	100	122	0.93
Cytoplasmic	123	214	0.96
Transmembrane Helix	215	234	0.67
Non-Cytoplasmic	235	256	0.50
Transmembrane Helix	257	276	0.38
Cytoplasmic	277	354	0.56