YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77975227
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDVQQNSNQ KKLDLAQDIA DAEISRTLRK AKVSAIIRYV VLIFVGLMML YPLLWMFSAA  60
   61 FKPNNEIFTT LGLWPEHPTS DGFVNGWKTG TEYNFGHYML NTFKFVIPKV ILTIISSTIV 120
  121 AYGFARFEIP WKKFWFATLI TTMLLPSTVL LIPQYIMFRE MGMLNSYMPL YLPLAFATQG 180
  181 FFVFMLIQFL RGVPRDMEEA AQIDGCNSFQ VLWYVVVPIL KPAIISVALF QFMWSMNDFI 240
  241 GPLIYVYSVD KYPIALALKM SIDVTEGAPW NEILAMASIS ILPSIIVFFL AQRYFVQGVT 300
  301 SSGIKG

Type	Start	End	Confidence
Cytoplasmic	1	34	0.99
Transmembrane Helix	35	55	0.94
Non-Cytoplasmic	56	104	0.95
Transmembrane Helix	105	125	0.96
Cytoplasmic	126	133	0.91
Transmembrane Helix	134	156	0.92
Non-Cytoplasmic	157	169	0.88
Transmembrane Helix	170	190	0.94
Cytoplasmic	191	210	0.92
Transmembrane Helix	211	233	0.92
Non-Cytoplasmic	234	272	0.93
Transmembrane Helix	273	296	0.87
Cytoplasmic	297	306	0.95