YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77975004, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.77
Transmembrane Helix	6	24	0.90
Cytoplasmic	25	30	0.66
Transmembrane Helix	31	49	0.88
Non-Cytoplasmic	50	55	0.86
Transmembrane Helix	56	76	0.91
Cytoplasmic	77	86	0.82
Transmembrane Helix	87	107	0.95
Non-Cytoplasmic	108	114	0.68
Transmembrane Helix	115	134	0.95
Cytoplasmic	135	151	0.84
Transmembrane Helix	152	172	0.92
Non-Cytoplasmic	173	182	0.73
Transmembrane Helix	183	201	0.93
Cytoplasmic	202	209	0.78
Transmembrane Helix	210	231	0.83
Non-Cytoplasmic	232	233	0.65
Transmembrane Helix	234	253	0.84
Cytoplasmic	254	267	0.74
Transmembrane Helix	268	288	0.88
Non-Cytoplasmic	289	293	0.66
Transmembrane Helix	294	313	0.90
Cytoplasmic	314	325	0.72
Transmembrane Helix	326	345	0.94
Non-Cytoplasmic	346	354	0.74
Transmembrane Helix	355	376	0.91
Cytoplasmic	377	602	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGSPLLTAI LLFLFAAVVA VPIAQRLGIG AVLGYLIAGI AIGPWGLGFI RDVDEILHFS  60
   61 ELGVVFLMFI IGLELNPAKL WQLRRSIFGV GACQVVITAA VLGALLYFTQ FAWQAALIGG 120
  121 VGLAMSSTAM ALQLMREKGM NRNEGGQLGF SVLLFQDMAV IPALALIPIL AGGGGAANDW 180
  181 VKIGIKVAAF AGMLIGGRYL LRPLFRYIVA SGVREVFTAA ALLVVLGSAL FMDALGLSMA 240
  241 LGTFIAGILL AESEFQHELE IAIEPFKGLL LGLFFISVGM ALNLGVLFTH LLDVLLGVVA 300
  301 LVFIKGTVLY GLARTFGLRR SVRLQFAGVL SQGGEFAFVL FSAAFSQHVL NAEQLALLLV 360
  361 VVTLSMMTTP LLMQLIDRIL IRRYNAQEES DEKPFVEDND PQVIIVGFGR FGQVIGRLLM 420
  421 ANKMRITVLE RDVSAVSVMR KYGYKVYYGD ATELELLRAA GAEKAKAIVI TCNEPEDTMT 480
  481 LVHLCQQHFP NLHILARARG RVEAHELLQN GVKDFTRETF SSALELGRKT LLELGMHPHQ 540
  541 AYRAQQHFRR LDMRMLRELV PQHHGDVAQI SRIKEARREL EDIFQREMLH ESRQLDGWDE 600
  601 YE