YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238789325, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKADNPFDAL LPAAMAKVAE DAGVYKATKH PLKTFYLAIT AGVFISIAFV FYITATTGTA  60
   61 GVPFGFAKLV GGICFSLGLM LVVVCGGDLF TSTVLTTVAK ASGRITWRQL GCNWVNVYVG 120
  121 NLIGALFFVC LIWFAGQYTV ANGQWGLNVL QTADHKLHHT FIEAVCLGIL ANLMVCLAVW 180
  181 MSYSGRTIMD KMFAMILPVG MFVASGFEHS IANMFMIPMG IVIKNFASPE FWQSIGAAPE 240
  241 QFAHLTVSNF IIDNLIPVTI GNIIGGGLLV GLTYWVIYLR GDQQH

Type	Start	End	Confidence
Cytoplasmic	1	34	0.98
Transmembrane Helix	35	56	0.93
Non-Cytoplasmic	57	68	0.81
Transmembrane Helix	69	95	0.83
Cytoplasmic	96	113	0.88
Transmembrane Helix	114	136	0.93
Non-Cytoplasmic	137	159	0.91
Transmembrane Helix	160	181	0.94
Cytoplasmic	182	191	0.83
Transmembrane Helix	192	212	0.89
Non-Cytoplasmic	213	254	0.91
Transmembrane Helix	255	278	0.90
Cytoplasmic	279	285	0.92