YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238787795, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.78
Transmembrane Helix	6	25	0.93
Cytoplasmic	26	32	0.67
Transmembrane Helix	33	55	0.85
Non-Cytoplasmic	56	70	0.62
Transmembrane Helix	71	93	0.85
Cytoplasmic	94	110	0.78
Transmembrane Helix	111	133	0.89
Non-Cytoplasmic	134	152	0.65
Transmembrane Helix	153	171	0.62
Cytoplasmic	172	194	0.54
Transmembrane Helix	195	216	0.82
Non-Cytoplasmic	217	223	0.56
Transmembrane Helix	224	245	0.81
Cytoplasmic	246	250	0.59
Transmembrane Helix	251	274	0.88
Non-Cytoplasmic	275	292	0.59
Transmembrane Helix	293	316	0.89
Cytoplasmic	317	622	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMPNIGAFI AWGIITALFI PTGWLPNETL AKLVGPMITY LLPLLIGFTG GRLVGGDRGG  60
   61 VVGAITTMGV IVGADMPMFL GAMIAGPLGG WAIKRFDRWV DGKIKSGFEM LVNNFSAGII 120
  121 GMLLAILAFM AIGPLVEVLS QGLAKGVHFM VQLNLLPLTS IFVEPAKILF LNNAINHGIF 180
  181 SPLGIQQATE TGKSIFFLIE ANPGPGMGVL MAYMFFGRGN AKQSAGGAAI IHFFGGIHEI 240
  241 YFPYVLMNPR LLLAVILGGM TGVFTLTVLN GGLVSPASPG SILAVLAMTP KGAYFANIAA 300
  301 VAAAFAVSFV VSAILLKTSK VKDEDEDSLE DATRRMQDMK AQSKGAQAAN AAAAAGDLST 360
  361 VRKIIVACDA GMGSSAMGAG VLRKKVQDAG LKYISVTNCA INNLPEDVDL VITHRDLTER 420
  421 AMRHAPQAQH ISLTNFLDSQ LYSNLTARLV EASDAATKAQ KVIEKLDDSF EPSEANLFRL 480
  481 GAENIFLNQH ATAKEQAIRF AGEQLVKGGY VEPEYVEAML EREKLTSTYL GESIAVPHGT 540
  541 IEAKDRVLKT GVVFCQYPDG VRFGDEEDEV ARLVIGIAAR NNEHIQVITS LTNALDDDSV 600
  601 IERLSKTTSV QEVLDLLGGK KS