YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77973240, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	389	0.99
Transmembrane Helix	390	410	0.92
Cytoplasmic	411	419	0.90
Transmembrane Helix	420	444	0.85
Non-Cytoplasmic	445	451	0.95
Transmembrane Helix	452	473	0.92
Cytoplasmic	474	491	0.91
Transmembrane Helix	492	510	0.93
Non-Cytoplasmic	511	531	0.85
Transmembrane Helix	532	554	0.92
Cytoplasmic	555	564	0.82
Transmembrane Helix	565	585	0.90
Non-Cytoplasmic	586	616	0.88
Transmembrane Helix	617	635	0.95
Cytoplasmic	636	644	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIWLKFCLL CCCWWLSSSI AWANPDYQQW VNDIQSRLDK TSQLYQQQNN DEARTTVQMA  60
   61 YFEVFENLEG PIRINISAQK SYQMEAAFGE IRRMIGEGKS QAEVDNKINW LKNELTGVLP 120
  121 ILTDGHKLTA EQQHATYENN DIAVYWQQSF KIIDDLLAQA ITEYQDGNLA AASQSVQQAH 180
  181 YQGFKNSEME MSVRGNRSSQ QAAAINQQFT ALIDLTSKPD QITEIAYRVT GLLQTIEDIL 240
  241 PGLPTTREQQ QVSADQTAMG QSSTSTINSD GQTNADWAAV SSKINQSISD SISQYQKGQT 300
  301 TPAMMAVQDT YFDLFEASGM ENKVGSRDAA FKSTLEGHFT RLVSLMKAGQ PVEQLQSEAQ 360
  361 ALQKDLASAV EMLGGGDETD WSLFIYSLLI IVREGLEALL IVAAIVAYLV KNNHQDKLPL 420
  421 IRQSVVVALI ASVLTAFVFQ WLFANSGQSR ELLEGFTMMI AVVMLFSMSY WLLSKTEARQ 480
  481 WKAYLEGKFS KSLSSGSMIG LWLTSFLAVY REGAETVLFY LALMGDASTA SGHLSILAGF 540
  541 GVGCVILLAA YLVMRFTVVK LPLKPFFMFT GGFMYLMAFV FAGKSVLELI EGKLFEPTLL 600
  601 PGVPEISWLG IYPYLETLIP QGILLIAALV ALWVMQRRGR AIPA