YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238790441, gi...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRVFIPLYL MVIMNNLMQQ LQSMLGQVTK KNNEGGSSLS NMLVPGALGG LAGLLVGSKS  60
   61 SRKLLSKYGS SALLVGGGAV LSTVLWNKYK DRIRQNHQDE PQYGQQATPV DQRVQRLVMA 120
  121 LVFAAKSDGH IDAKERRIIE QNMQQAGIGE QGERLVQQAI DRPLDPQLLA SEIQNEEEAL 180
  181 ELYFLSCAVI DVDHFMERSY LTALGDALKI PQDVRDGIEQ DIQQQKQSIA D

Type	Start	End	Confidence
Cytoplasmic	1	36	0.49
Transmembrane Helix	37	58	0.77
Non-Cytoplasmic	59	64	0.47
Transmembrane Helix	65	87	0.76
Cytoplasmic	88	231	0.49