YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238722808, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.99
Transmembrane Helix	58	80	0.87
Non-Cytoplasmic	81	86	0.67
Transmembrane Helix	87	105	0.91
Cytoplasmic	106	134	0.83
Transmembrane Helix	135	157	0.77
Non-Cytoplasmic	158	163	0.83
Transmembrane Helix	164	185	0.90
Cytoplasmic	186	194	0.85
Transmembrane Helix	195	215	0.95
Non-Cytoplasmic	216	236	0.88
Transmembrane Helix	237	260	0.86
Cytoplasmic	261	279	0.93
Transmembrane Helix	280	301	0.93
Non-Cytoplasmic	302	321	0.88
Transmembrane Helix	322	343	0.90
Cytoplasmic	344	370	0.93
Transmembrane Helix	371	392	0.92
Non-Cytoplasmic	393	399	0.80
Transmembrane Helix	400	421	0.93
Cytoplasmic	422	438	0.94
Transmembrane Helix	439	460	0.92
Non-Cytoplasmic	461	464	0.79
Transmembrane Helix	465	486	0.87
Cytoplasmic	487	503	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREPPLFLMQ SALSVKKPPQ IHLRKALLSR QWVTDAAEDR MEQQLQDSTL KRGLKNRHIQ  60
   61 LIALGGAIGT GLFLGIAQTI KMAGPSVILG YAIGGFIAFL IMRQLGEMVV EEPVAGSFSH 120
  121 FAYKYWGDFA GFLSGWNYWA MFILVGMAEL TAVGIYIQYW WPEIPTWVSA AVFFVLINAI 180
  181 NLVNVRMYGE TEFWFAIIKV AAIIGMIVFG AYLLASGSGG PNASVTNLWA QGGFMPHGLS 240
  241 GLVMAMAVIM FSFGGLEMVG ITAAEAEDPH HSIPKATNQV VYRILIFYIG SLAVLLSLYP 300
  301 WGKVVEGGSP FVMIFHALDS NLVATILNVV VLTAALSVYN SGVYCNSRML FGLASQGNAP 360
  361 KVLTKVNKRG VPILSIALSA LATSAGVVIN YVMPGKAFEL LMALVVSTLV INWVMICLAH 420
  421 LKFRAAKVKE GVEPRFKALW YPYGNYLCLV FLMLILVIMY LTDGIQISVL MMPAWVALLW 480
  481 CGFRLTRRKY KNSQSAVKDS NAV