YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77972716, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILIPVVIGA LFLLPPVGFA IVTLVVCMLA AWEWGQLAGF ASRSQRIWLA ILCGFLLVLM  60
   61 LLSLPAYQHS AHLPQVSVPL WLSMGWWMTA LMLVLTYPRS AAFWRDSRLL RIIFGILTIV 120
  121 PFFWGMVALR QYGYEQNHNI GAWWLLYVML LVWGADSGAY MFGKLFGKHK LAPKVSPGKT 180
  181 WEGLIGGLLT SALISWLFGR YAPLDIIPEK LLICSVVAAL ASVLGDLTES MFKREAGIKD 240
  241 SGHLIPGHGG ILDRIDSLTA AVPVFACLML LVF

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.93
Transmembrane Helix	8	32	0.85
Cytoplasmic	33	46	0.87
Transmembrane Helix	47	67	0.95
Non-Cytoplasmic	68	77	0.80
Transmembrane Helix	78	97	0.91
Cytoplasmic	98	108	0.81
Transmembrane Helix	109	129	0.92
Non-Cytoplasmic	130	139	0.86
Transmembrane Helix	140	163	0.88
Cytoplasmic	164	179	0.90
Transmembrane Helix	180	199	0.92
Non-Cytoplasmic	200	205	0.77
Transmembrane Helix	206	228	0.75
Cytoplasmic	229	273	0.65