YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77972370, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISLLQALA LGILAFIAGL DMFNGLTHMH RPVVLGPLVG LILGDLHTGI LTGGTLELVW  60
   61 MGLAPLAGAQ PPNVIIGTIV GTAFAITAGV KPEVAVGVAV PFAVAVQMGI TFLFSIMSGV 120
  121 MARCDKMAAN ADTAGIERVN YLALLALGTF YFLCAFLPIY FGAEHAKTVI DVLPARLIDG 180
  181 LGVAGGIMPA IGFAVLLKIM MKNIYIPYFI LGFVAAAWLK LPVLAIAAAA LAMAIIDFMR 240
  241 KDPPAQQPSR TEQEEFEDGI

Type	Start	End	Confidence
Cytoplasmic	1	7	0.66
Transmembrane Helix	8	27	0.91
Non-Cytoplasmic	28	37	0.59
Transmembrane Helix	38	61	0.76
Cytoplasmic	62	70	0.53
Transmembrane Helix	71	90	0.85
Non-Cytoplasmic	91	97	0.65
Transmembrane Helix	98	121	0.88
Cytoplasmic	122	140	0.76
Transmembrane Helix	141	161	0.96
Non-Cytoplasmic	162	176	0.75
Transmembrane Helix	177	197	0.91
Cytoplasmic	198	208	0.62
Transmembrane Helix	209	236	0.80
Non-Cytoplasmic	237	260	0.79