YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77972314
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDTTTVTTA TTGEKKLTPA DIRGVFLRSN LFQGSWNFER MQALGFCFSM VPAIRRLYPE  60
   61 NSEERKQAIK RHLEFFNTQP FVAAPILGVT LAMEEQKANG AEIDDAAING IKVGLMGPLA 120
  121 GVGDPIFWGT VRPVLAALGA GIAMSGSLLG PLLFFILFNV VRLLTRYYGV AYGYKKGVNI 180
  181 VGDMDGGLLQ KLTEGASILG LFVMGALVNK WTHVNIPVVV SKITNQNGET TVTTVQTILD 240
  241 QLMPGLVPLL LTFGCMWLLR RKVNALWIIM GFFAIGIFGY WIGLLGL

Type	Start	End	Confidence
Cytoplasmic	1	74	0.74
Transmembrane Helix	75	93	0.46
Non-Cytoplasmic	94	134	0.51
Transmembrane Helix	135	158	0.90
Cytoplasmic	159	191	0.71
Transmembrane Helix	192	213	0.58
Non-Cytoplasmic	214	237	0.67
Transmembrane Helix	238	258	0.66
Cytoplasmic	259	264	0.79
Transmembrane Helix	265	284	0.96
Non-Cytoplasmic	285	287	0.82