YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77963373, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANMFALILA IATLLTGIIW CFERFKWGPA RQAKIAAVHA QTAEIKAQAG DAVDNKTLSQ  60
   61 AARQPGWIET CASVFPVLAL VFIVRSFIYE PFQIPSGSMM PTLLIGDFIL VEKFAYGIKD 120
  121 PITQTTLIPT GHPKRGDIAV FKYPLDPRVD YIKRVVGLPG DRVSYNPISK EVTVQPACNT 180
  181 GTSCDSALPI TYSPSEPSDF VQTFRYSGNG ETSAGFFQIP TNQAVPDGGV RLRERSETLG 240
  241 TVAHHILTVP GRQDQIGGYY QQPNQPLGVW VVPEGHYFMM GDNRDNSADS RYWGFVPERN 300
  301 LVGKATAIWM SFEKQEGEWP TGVRLSRIGG VH

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.51
Transmembrane Helix	5	22	0.54
Cytoplasmic	23	65	0.52
Transmembrane Helix	66	84	0.51
Non-Cytoplasmic	85	332	0.88