YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77958238
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.92
Transmembrane Helix	21	41	0.93
Cytoplasmic	42	70	0.87
Transmembrane Helix	71	91	0.89
Non-Cytoplasmic	92	96	0.76
Transmembrane Helix	97	114	0.95
Cytoplasmic	115	133	0.83
Transmembrane Helix	134	152	0.95
Non-Cytoplasmic	153	171	0.89
Transmembrane Helix	172	191	0.93
Cytoplasmic	192	199	0.76
Transmembrane Helix	200	220	0.90
Non-Cytoplasmic	221	234	0.81
Transmembrane Helix	235	256	0.93
Cytoplasmic	257	262	0.86
Transmembrane Helix	263	284	0.91
Non-Cytoplasmic	285	289	0.80
Transmembrane Helix	290	311	0.93
Cytoplasmic	312	338	0.92
Transmembrane Helix	339	357	0.96
Non-Cytoplasmic	358	360	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVWLAEYLV KFYSGFNVFS YLTFRAIVSL LTALVISLWM GPHLIAYLQK LQIGQVVRND  60
   61 GPESHFSKRG TPTMGGLMIL FSITISVLMW AYPSNPYVWC VLFILVGYGI VGFIDDYRKV 120
  121 VRKDTKGLIA RWKYFWQSII ALAAAFAMYS IGKDTPATEL VVPFFKDIMP QLGLLYILLA 180
  181 YFVIVGTSNA VNLTDGLDGL AIMPTVFVAG GFALVAWATG NVNFAAYLHI PYLRHAGELV 240
  241 IVCTAIVGAG LGFLWFNTYP AQVFMGDVGS LALGGALGTI AVLLRQEFLL VIMGGVFVVE 300
  301 TLSVILQVGS FKLRGQRIFR MAPIHHHYEL KGWPEPRVIV RFWIISLMLV LIGLATLKVR 360
  361