YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77960934
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDLRLILIV VGAIAIIALL LHGLWTSRKE RSSLFRDRPV KRLKQERVET PIESLDEGVG  60
   61 EVRVRTAHPQ EKPSFSHIDD DDEEMPVIQH TETKPAQVKT ESRQQPFASV QTEYDDPLLG 120
  121 GLSAEQPPHE SQRDPLLGSV DESYSQPRHV EPQHAAEPAP RAAPQPEPVV PAPEVKQQKL 180
  181 KETVLVLHVA AHHGGALGGE LLLQSVLQSG FQFGEMGIFH RHLSPAGSGP VLFSLANMVK 240
  241 PGSFDPDTMA DFSTPGVSMF MMVPSYGDAH QNFKLMLQSA QRIADDVGGV VLDDERRMMT 300
  301 PQKLETYKAR IREVLDANAT A

Type	Start	End	Confidence
Cytoplasmic	1	5	0.72
Transmembrane Helix	6	26	0.90
Non-Cytoplasmic	27	321	0.81