YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238798991, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASSLFPQD SNSKRLLIAF VVTTLFMVLE AIGGWLSGSL ALLADAGHML TDSAALFIAL  60
   61 MAVHFSQRKP DSRHTFGYLR LTTLAAFVNA AALVLIVILI VWEAVQRFVS PHEVMGGPML 120
  121 IIAIAGLLAN IFCFWILHRG GEDKNINVRA AALHVLGDLL GSVGAIVAAI VILTTGWTPI 180
  181 DPILSVLVSA LVLRSAWRLL EESFHELLEG APQEIDIAKL RKDLCADIYE VRDVHHVHLW 240
  241 QVGDQRLMTL HVQVIPPRDN DELLQRIQHH LLHHYNIGHA TIQMEYQGCA TPDCSINQAA 300
  301 PVGEHHHHHH

Type	Start	End	Confidence
Cytoplasmic	1	15	0.97
Transmembrane Helix	16	36	0.94
Non-Cytoplasmic	37	45	0.71
Transmembrane Helix	46	66	0.91
Cytoplasmic	67	77	0.92
Transmembrane Helix	78	102	0.87
Non-Cytoplasmic	103	116	0.84
Transmembrane Helix	117	138	0.92
Cytoplasmic	139	150	0.91
Transmembrane Helix	151	173	0.89
Non-Cytoplasmic	174	179	0.64
Transmembrane Helix	180	197	0.75
Cytoplasmic	198	310	0.78