YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238799411, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKLVLVLN CGSSSLKFAI IDATNGEEHL SGLAECFHLP EARIKWKIDG GKQEAALGAG  60
   61 AAHSEALNFI VNTILAQKPE LSAQLTAIGH RIVHGGEKFT ASAIVTDEVI QGIKDSIPFA 120
  121 PLHNPAHLIG IAEALKSFPN LTNKNVAVFD TAFHQTMPEE SYLYALPYSL YKDHGIRRYG 180
  181 AHGTSHFYVS QEAAKTLNKP LEELNVITCH LGNGGSVTAV RNGKCVDTSM GLTPLEGLVM 240
  241 GTRSGDIDPA IIFHLHDSMG MSVDQINKLL TKESGLLGLT EVTSDCRYVE DNYETKADAR 300
  301 RAMDVFCHRL AKYIGAYTAL MDGRLDAVIF TGGIGENAAM VRELTLDKLG LLGFEIDHER 360
  361 NLAARFGKSG TITKDGSRLA LVIPTNEELV IAQDAARLTA

Type	Start	End	Confidence
Signal Peptide	1	19	0.76
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	400	0.99