YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77960200
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIKKQSAT RAPDHHNATK LPTLGRVLGR IHLTVVLVSV TTAGIFLTLA ALFALRVYAD  60
   61 HNLHLIARSI SYTTEAAVVF GDKVAANESL SLIAANEEVA EAKILDVNGR EMASWTQPDD 120
  121 GPMHYLEQNV ARWALPQPVV LPMVHAGNEI GTIVIVGHGG SLLRFLLQGL AGLLACLLLS 180
  181 TVVALVLSRR MLFGIIGSLN QITDVAHNVS RNRSFGQRVP SAKIAELNEL SSDFNGLLEE 240
  241 LEVWQEHLTQ EHDSLAHRAA HDSLTGLANR AFFEGRLSRT LSDCKPSEHA AVLFLDGDRF 300
  301 KEINDNYGHA AGDVVLTTIA DRIRALLRET DLVARLGGDE FAVLLAPIHK TDDVLLIASN 360
  361 IIESMSQPIV LADGREITTS LSIGIAIYPD HAQTPEALLQ RADEAMYQAK KNIQSGGGRV 420
  421 IAHLSDTPLT ESLG

Type	Start	End	Confidence
Cytoplasmic	1	30	0.77
Transmembrane Helix	31	55	0.87
Non-Cytoplasmic	56	164	0.68
Transmembrane Helix	165	188	0.87
Cytoplasmic	189	434	0.61