YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238799387, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.98
Transmembrane Helix	110	130	0.92
Non-Cytoplasmic	131	157	0.88
Transmembrane Helix	158	177	0.93
Cytoplasmic	178	185	0.74
Transmembrane Helix	186	207	0.88
Non-Cytoplasmic	208	225	0.92
Transmembrane Helix	226	244	0.89
Cytoplasmic	245	253	0.76
Transmembrane Helix	254	277	0.92
Non-Cytoplasmic	278	297	0.78
Transmembrane Helix	298	320	0.85
Cytoplasmic	321	339	0.72
Transmembrane Helix	340	361	0.90
Non-Cytoplasmic	362	369	0.69
Transmembrane Helix	370	390	0.72
Cytoplasmic	391	398	0.79
Transmembrane Helix	399	422	0.86
Non-Cytoplasmic	423	437	0.82
Transmembrane Helix	438	460	0.93
Cytoplasmic	461	471	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVKQQDID QLIVLVGGRE NIATVSHCIT RLRFVLNDPS KASPKEIENL SMVKGCFTNA  60
   61 GQFQVVIGPE VDDYYQALIA KIGLNEVDKE QTKLAARQNM TWFERGISHF AEIFFPLLPA 120
  121 LISGGLILGF RNVIGDIPMS DGKTLAQLYP AWKTIYDFLW LLGEAIFFYL PVAICWSTVK 180
  181 KMGGTPVLGI VLGITLVSPQ LMNSYLLGQQ TPEVWNFGWF TIEKVGYQAQ VIPSILAGLA 240
  241 LGWIETNLKK IIPAYLYLVV VPVVSLLLAV FLAHTLIGPF GRMIGDGVAW GVKAVMTGSF 300
  301 APIGAALFGF LYAPLVITGV HQTTLAIDMQ MIQSMGGTPV WPLIALSNIA QASAVLGIII 360
  361 ISRKINEREI SVPAAISAYL GVTEPAMYGI NLKYRFPMLC AMIGSALAGL ICGLTGVMAN 420
  421 GIGVGGLPGI LSIKPQFWGI YALAMLVAIV VPLVLTIMVY KRKESRGELP V