YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77959935
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDFKIPLRL IGILADGAFH SGEQLGEMFG MSRAAINKHI QTVREWGLDV FTVPGKGYSL  60
   61 PAPIQLLDEQ KILSYLPAGQ VAVLPVVDST NQYLLDRIGE LKSGDACVAE YQQAGRGRRG 120
  121 RQWVSPFGAN LYLSMFWRLE QGPAAAMGLS LVVGIVMAEV LHKLGAEKVR VKWPNDLYLN 180
  181 DKKLAGILVE LTGKTGDAAQ LVIGAGINLT MRESTTNVIN QDWINLQEAG VIIDRNKLTA 240
  241 ELLSELRLAV VKFENEGLSA FISRWREMDN YLDRPVRLII GNQEIYGVAR GIDQQGALLL 300
  301 EQDGVIKPYI GGEISLRGV

Type	Start	End	Confidence
Non-Cytoplasmic	1	143	0.59
Transmembrane Helix	144	164	0.57
Cytoplasmic	165	319	0.55