YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77959705, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRTFIMVLD SFGIGASADA NKFGDQGADT LGHIAEACAR GEANVGRSGP LTLPNLSRLG  60
   61 LGKAAEESTG KFPVGLDKDA DIIGAYGYAS ELSSGKDTPS GHWEIAGVPV LFDWGYFSDV 120
  121 ENSFPQELLD KLVKRANLPG YLGNCHSSGT VILDQLGEEH MKTGKPIFYT SADSVFQIAC 180
  181 HEETFGLDRL YELCEIAREE LTEGGYNIGR VIARPFIGDK PGNFQRTGNR HDLAVEPPAP 240
  241 TMLKKLVDEK GGEVVSIGKI ADIYAHVGIT QKVKATGLDA LFDATIEEMK KAGDNTIVFT 300
  301 NFVDFDSSYG HRRDVAGYAA ALELFDRRLP ELLALVKEDD IMILTADHGC DPTWPGTDHT 360
  361 REHIPVLVYG PKVKPGSLGH RETFADIGQT VAKYFNLSPM DYGKSML

Type	Start	End	Confidence
Signal Peptide	1	18	0.94
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	407	0.99