YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77959621
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKEKRIQRY SAPERINHWI VAFCFMLAAI SGLGFFFPSF NWLMNIFGTP QLARILHPFA  60
   61 GVIMFAAFLI MFFRYWKHNL INKEDLEWAK NIHKIAMNEE VGDTGRYNFG QKCVFWAAII 120
  121 SLLLLLASGV VIWRPYFAPS FPIPLIRLAL LVHSLAAVGL ILVIMVHIYA ALWVKGTITA 180
  181 MVEGWVPAAW AKKHHPRWYR EVNAKRQLQK KQEEKP

Type	Start	End	Confidence
Cytoplasmic	1	15	0.99
Transmembrane Helix	16	38	0.90
Non-Cytoplasmic	39	54	0.87
Transmembrane Helix	55	76	0.91
Cytoplasmic	77	113	0.98
Transmembrane Helix	114	133	0.97
Non-Cytoplasmic	134	148	0.78
Transmembrane Helix	149	171	0.89
Cytoplasmic	172	216	0.93